In the daylight of biotechnology:Rcpp and R applications
Scientific tutorials and data application
Saturday, October 01, 2016
Shell sorting algorithm: review and implementation example using Rcpp
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There are several reasons for studying t simple sorting algorithms in some detail. First, they provide a relatively painless way to ...
Monday, June 13, 2016
Fast kmer counting table algorithm using perfect hash function: C++ pseudo-code integration into R using Rcpp API
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Abstract Counting kmers (substrings of length k in DNA sequence data) is an essential component of many methods in bioinformati...
Monday, May 30, 2016
Fast text file reading into R using Rcpp functions
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Using the C++ I/O system provides fast input functions which can be used in this Rcpp code with two ways: 1-using std::stringstream ...
Monday, May 23, 2016
Algorithm of binary search :Rcpp code
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A binary search divides a range of values(sorted array) into halves by the median point(noted k), and continues tonarrow down the fi...
Wednesday, February 24, 2016
Seqan an Rcpp
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https://uclrdata.wordpress.com/2013/04/05/unix-sequencing-tools-vs-bioconductor/
Seqan and rcpp
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https://uclrdata.wordpress.com/2013/05/01/rcpp-rcpparmadillo-seqan-sequence-analysis-part-3/
Tuesday, February 16, 2016
Rcpp: the Shell sort code with gaps function exemples
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shellsoert.htm /* * The method starts by sorting pairs of elements far apart from each other, then progressively reducing the...
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